Index

A

A() (in module ImageD11.unitcell) accept_contracted_point() (ImageD11.simplex.Simplex method) accept_expanded_point() (ImageD11.simplex.Simplex method) accept_reflected_point() (ImageD11.simplex.Simplex method) accumulate() (in module ImageD11.sinograms.sinogram2crysalis) add() (ImageD11.grid_index_parallel.uniq_grain_list method) add_image() (ImageD11.rsv_mapper.rsv_mapper method) add_map() (ImageD11.sinograms.tensor_map.TensorMap method) addcellpeaks() (ImageD11.transformer.transformer method) addcolumn() (ImageD11.columnfile.columnfile method) (ImageD11.transformer.transformer method) additem() (ImageD11.sym_u.group method) (ImageD11.sym_u.trans_group method) addMenuItems() (ImageD11.tkGui.guimaker.GuiMaker method) addpar() (ImageD11.parameters.parameters method) addtoheader() (ImageD11.peakmerge.pkimage method) admet (class in ImageD11.forward_model.sample_environment) allocate_vol() (ImageD11.rsv.rsv method)

AnalysisSchema (class in ImageD11.parameters) anglehkls() (ImageD11.unitcell.unitcell method) angmod() (in module ImageD11.gv_general) append_uniq() (ImageD11.grid_index_parallel.uniq_grain_list method) apply() (ImageD11.tkGui.listdialog.listdialog method) apply_halfmask_to_sino() (in module ImageD11.sinograms.roi_iradon) apply_lut_parallel() (in module ImageD11.blobcorrector) applyargs() (ImageD11.refinegrains.refinegrains method) (ImageD11.transformer.transformer method) array_bin() (in module ImageD11.cImageD11) array_lt() (in module ImageD11.cImageD11) assign_peaks_to_grains() (in module ImageD11.nbGui.nb_utils) assign_ring_histo() (in module ImageD11.peakselect) assignlabels() (ImageD11.refinegrains.refinegrains method) assigntorings() (ImageD11.indexing.indexer method) ATTRNAMES (ImageD11.sinograms.dataset.DataSet attribute) axangle2u() (in module ImageD11.forward_model.ori_converter) axis_from_matrix() (in module ImageD11.gv_general)

B

B (ImageD11.grain.grain property) (ImageD11.sinograms.tensor_map.TensorMap property) B() (in module ImageD11.unitcell) BadVectors bench() (in module ImageD11.columnfile) bgsub() (ImageD11.frelon_peaksearch.worker method) bigarray (ImageD11.columnfile.columnfile property)

body() (ImageD11.tkGui.listdialog.listdialog method) BTmat() (in module ImageD11.unitcell) build_6x6_rot_mat() (in module ImageD11.stress) build_sinogram() (ImageD11.sinograms.sinogram.GrainSinogram method) build_slice_arrays() (in module ImageD11.sinograms.sinogram) build_slice_arrays_clean() (in module ImageD11.sinograms.sinogram) buttonbox() (ImageD11.tkGui.listdialog.listdialog method)

C

C() (in module ImageD11.unitcell) calc_drlv2() (in module ImageD11.indexing) calc_sfs() (in module ImageD11.forward_model.schmidt_factor) calculate_errors_at_vertices() (ImageD11.simplex.Simplex method) camera_names_ID11() (in module ImageD11.forward_model.io) cancel() (ImageD11.tkGui.listdialog.listdialog method) cell_to_B() (in module ImageD11.finite_strain) cellfromstring() (in module ImageD11.unitcell) check() (ImageD11.rc_array.rc_array method) (ImageD11.sparseframe.sparse_frame method) (in module ImageD11.sinograms.dataset) check_files() (ImageD11.sinograms.dataset.DataSet method) check_images() (ImageD11.sinograms.dataset.DataSet method) check_multiprocessing() (in module ImageD11.cImageD11) check_shape() (ImageD11.sinograms.tensor_map.TensorMap method) check_sparse() (ImageD11.sinograms.dataset.DataSet method) checkop() (in module ImageD11.symops) checkvol() (in module ImageD11.lattice_reduction) chimat() (in module ImageD11.gv_general) chiwedge() (in module ImageD11.gv_general) chkarray() (ImageD11.columnfile.columnfile method) choose_best() (ImageD11.sinograms.point_by_point.PBPMap method) chooseframe() (in module ImageD11.nbGui.segmenter_gui_utils) clean() (in module ImageD11.columnfile) (in module ImageD11.sinograms.lima_segmenter) clear_cache() (ImageD11.grain.grain method) (ImageD11.sinograms.tensor_map.TensorMap method) clogging (class in ImageD11.indexing) close() (ImageD11.sinograms.sinogram2crysalis.SinoScan method) colfile2db() (in module ImageD11.columnfile) colfile_from_dict() (in module ImageD11.columnfile) colfile_from_hdf() (in module ImageD11.columnfile) colfile_to_hdf() (in module ImageD11.columnfile) colfileobj_to_hdf() (in module ImageD11.columnfile) columnchooser (class in ImageD11.tkGui.listdialog) columnfile (class in ImageD11.columnfile) ColumnFileType (class in ImageD11.ImageD11options) combine() (ImageD11.peakmerge.peak method) comp() (ImageD11.sym_u.group method) compare() (ImageD11.sinograms.dataset.DataSet method) compute_Cgve() (in module ImageD11.rotdex) compute_Deformation_Gradient_Tensors() (ImageD11.stress.EpsSigSolver method) compute_dgdt() (in module ImageD11.rotdex) compute_g_from_k() (in module ImageD11.sinograms.point_by_point) (in module ImageD11.transform) compute_g_vectors() (in module ImageD11.sinograms.point_by_point) (in module ImageD11.transform) compute_grain_origins() (in module ImageD11.sinograms.point_by_point) (in module ImageD11.transform) compute_gv() (ImageD11.refinegrains.refinegrains method) compute_gve() (in module ImageD11.sinograms.point_by_point) compute_histo() (ImageD11.transformer.transformer method) compute_k_vectors() (in module ImageD11.sinograms.point_by_point) (in module ImageD11.transform) compute_lorentz_factors() (in module ImageD11.transform) compute_lp_factor() (in module ImageD11.refinegrains)

compute_origins() (in module ImageD11.sinograms.point_by_point) compute_polarisation_factors() (in module ImageD11.transform) compute_principal_components() (ImageD11.stress.EpsSigSolver method) compute_rad_arc() (ImageD11.compute_fazit.xydisp method) compute_save_epsig() (ImageD11.tkGui.guisolver.guisolver method) compute_sinsqth_from_xyz() (in module ImageD11.transform) compute_storage() (in module ImageD11.sinograms.properties) compute_total_intensity() (in module ImageD11.refinegrains) compute_tth_eta() (ImageD11.compute_fazit.xydisp method) (ImageD11.transformer.transformer method) (in module ImageD11.sinograms.point_by_point) (in module ImageD11.transform) compute_tth_eta_from_xyz() (in module ImageD11.sinograms.point_by_point) (in module ImageD11.transform) compute_tth_histo() (ImageD11.transformer.transformer method) (in module ImageD11.transform) compute_xyz_from_tth_eta() (in module ImageD11.transform) compute_xyz_lab() (in module ImageD11.sinograms.point_by_point) (in module ImageD11.transform) computegv() (ImageD11.transformer.transformer method) condition_filter() (ImageD11.saintraw.saintraw method) contract_simplex() (ImageD11.simplex.Simplex method) convert_h52_tif() (in module ImageD11.forward_model.io) convert_tensors_to_vecs() (ImageD11.stress.EpsSigSolver method) convert_to_list() (in module ImageD11.forward_model.io) copy() (ImageD11.columnfile.columnfile method) copyrows() (ImageD11.columnfile.columnfile method) cores_available() (in module ImageD11.cImageD11) correct() (ImageD11.blobcorrector.correctorclass method) (ImageD11.blobcorrector.perfect method) (ImageD11.frelon_peaksearch.worker method) (in module ImageD11.correct) correct_bins_for_half_scan() (ImageD11.sinograms.dataset.DataSet method) correct_cf_with_dxdyfiles() (in module ImageD11.blobcorrector) correct_cf_with_spline() (in module ImageD11.blobcorrector) correct_halfmask() (ImageD11.sinograms.sinogram.GrainSinogram method) correct_px_lut() (ImageD11.blobcorrector.correctorclass method) correct_recon_central_zingers() (in module ImageD11.sinograms.roi_iradon) correct_ring_current() (ImageD11.sinograms.sinogram.GrainSinogram method) correctorclass (class in ImageD11.blobcorrector) cosangle_vec() (in module ImageD11.lattice_reduction) cosangles_many() (in module ImageD11.unitcell) count_unique_peaks() (in module ImageD11.sinograms.point_by_point) count_unique_peaks_no_dtyi() (in module ImageD11.sinograms.point_by_point) counting_sort() (in module ImageD11.sinograms.sinogram) countse() (in module ImageD11.sinograms.properties) covariance_factor() (ImageD11.weighted_kde.gaussian_kde method) coverage() (ImageD11.indexing.indexer method) cplabel() (ImageD11.sparseframe.SparseScan method) create() (ImageD11.sinograms.properties.pks_table method) (in module ImageD11.sinograms.pread) cross() (in module ImageD11.unitcell) cross_product_2x2() (in module ImageD11.transform) Ctransform (class in ImageD11.transform) cubic() (in module ImageD11.refinegrains) (in module ImageD11.sym_u)

D

DataSet (class in ImageD11.sinograms.dataset) datasetnames (ImageD11.sinograms.lima_segmenter.SegmenterOptions attribute) debug() (ImageD11.indexing.clogging method) DeformationGradientTensor (class in ImageD11.finite_strain) degrees() (in module ImageD11.unitcell) degToRad() (in module ImageD11.forward_model.schmidt_factor) delete_file_if_exists() (in module ImageD11.forward_model.io) delete_group_from_h5() (in module ImageD11.forward_model.io) detector_rotation_matrix() (in module ImageD11.sinograms.point_by_point) (in module ImageD11.transform) deviatoric() (in module ImageD11.stress) deviatoric_tensors() (ImageD11.stress.EpsSigSolver method) distort() (ImageD11.blobcorrector.correctorclass method) divide_where() (in module ImageD11.sinograms.point_by_point) do3dmerge() (in module ImageD11.frelon_peaksearch) do_index() (in module ImageD11.indexing)

doc (ImageD11.saintraw.saintraw attribute) doindex() (in module ImageD11.grid_index_parallel) domap() (in module ImageD11.grid_index_parallel) download_url() (in module ImageD11.fetch_data) ds() (ImageD11.unitcell.unitcell method) dty_to_dtyi() (in module ImageD11.sinograms.geometry) dty_values_grain_in_beam() (in module ImageD11.sinograms.geometry) dty_values_grain_in_beam_sincos() (in module ImageD11.sinograms.geometry) dtyi_to_dty() (in module ImageD11.sinograms.geometry) dtyimask_from_recon() (in module ImageD11.sinograms.geometry) dtyimask_from_recon_sincos() (in module ImageD11.sinograms.geometry) dtyimask_from_sample() (in module ImageD11.sinograms.geometry) dtyimask_from_sample_sincos() (in module ImageD11.sinograms.geometry) dtyimask_from_step() (in module ImageD11.sinograms.geometry) dtyimask_from_step_sincos() (in module ImageD11.sinograms.geometry) dumbtypecheck() (ImageD11.parameters.parameters method) dzero_unitcell (ImageD11.sinograms.tensor_map.TensorMap property)

E

e6_to_symm() (in module ImageD11.finite_strain) (in module ImageD11.grain) editparameters() (ImageD11.tkGui.guisolver.guisolver method) eigen_decomposition() (in module ImageD11.stress) eiger_spatial (class in ImageD11.blobcorrector) empty (class in ImageD11.sinograms.sinogram2crysalis) eps (ImageD11.sinograms.point_by_point.PBPMap property) eps_crystal (ImageD11.sinograms.tensor_map.TensorMap property) eps_devia (ImageD11.sinograms.tensor_map.TensorMap property) eps_grain() (ImageD11.grain.grain method) eps_grain_matrix() (ImageD11.grain.grain method) eps_hydro (ImageD11.sinograms.tensor_map.TensorMap property) eps_sample (ImageD11.sinograms.tensor_map.TensorMap property)

eps_sample() (ImageD11.grain.grain method) eps_sample_matrix() (ImageD11.grain.grain method) EpsSigSolver (class in ImageD11.stress) error() (ImageD11.indexing.clogging method) estimate_steps() (ImageD11.refinegrains.refinegrains method) euler (ImageD11.sinograms.tensor_map.TensorMap property) euler2quat() (in module ImageD11.forward_model.ori_converter) euler2u() (in module ImageD11.forward_model.ori_converter) evaluate() (ImageD11.weighted_kde.gaussian_kde method) execute() (ImageD11.guicommand.guicommand method) expand_simplex() (ImageD11.simplex.Simplex method) export() (ImageD11.sinograms.properties.pks_table method) (ImageD11.sinograms.properties.shared_numpy_array method)

F

F() (in module ImageD11.unitcell) fft() (ImageD11.fft_index_refac.grid method) fight_over_peaks() (ImageD11.indexing.indexer method) FileType (class in ImageD11.ImageD11options) fill_in_docstrings() (in module ImageD11.cImageD11) fillcols() (in module ImageD11.columnfile) filter() (ImageD11.columnfile.columnfile method) (ImageD11.peakmerge.peakmerger method) filter_min() (ImageD11.transformer.transformer method) filter_normalise_recon() (in module ImageD11.sinograms.sinogram) filter_pairs() (in module ImageD11.unitcell) filterpixels() (in module ImageD11.sinograms.assemble_label) finalise() (ImageD11.labelimage.labelimage method) find() (ImageD11.indexing.indexer method) find_datasets_to_process() (in module ImageD11.nbGui.nb_utils) find_grain_id() (in module ImageD11.sinograms.sinogram) find_lattice() (in module ImageD11.lattice_reduction) find_ND_labels() (in module ImageD11.sinograms.properties) find_omega_ranges() (in module ImageD11.indexing) find_uniq() (ImageD11.sinograms.properties.pks_table method) find_uniq_hkls() (in module ImageD11.sym_u) find_uniq_u() (in module ImageD11.sym_u) find_vol() (ImageD11.rsv_mapper.rsv_mapper method) finite_strain_lab() (ImageD11.finite_strain.DeformationGradientTensor method) finite_strain_ref() (ImageD11.finite_strain.DeformationGradientTensor method) fit() (ImageD11.refinegrains.refinegrains method) (ImageD11.transformer.transformer method) fit_sample_position_from_recon() (in module ImageD11.sinograms.geometry) fit_sine_wave() (in module ImageD11.sinograms.geometry) fit_ub_t() (in module ImageD11.rotdex) fitagrain() (in module ImageD11.rotdex) fix_doc() (in module ImageD11.cImageD11) flip() (ImageD11.lattice_reduction.lattice method) (ImageD11.rc_array.rc_array method)

flip1() (in module ImageD11.labelimage) flip2() (in module ImageD11.labelimage) flip3() (in module ImageD11.labelimage) flip4() (in module ImageD11.labelimage) flip5() (in module ImageD11.labelimage) flip6() (in module ImageD11.labelimage) flip7() (in module ImageD11.labelimage) flip8() (in module ImageD11.labelimage) flip_up() (in module ImageD11.forward_model.ori_converter) fmt() (in module ImageD11.sym_u) form_stiffness_tensor() (ImageD11.stress.EpsSigSolver method) format (ImageD11.labelimage.labelimage attribute) formats (ImageD11.saintraw.saintraw attribute) fparl() (in module ImageD11.lattice_reduction) friedelpairs() (ImageD11.indexing.indexer method) frmtosparse (class in ImageD11.sinograms.lima_segmenter) from_combine_phases() (ImageD11.sinograms.tensor_map.TensorMap class method) from_data_cut() (in module ImageD11.sparseframe) from_data_mask() (in module ImageD11.sparseframe) from_grainsinos() (ImageD11.sinograms.tensor_map.TensorMap class method) from_h5() (ImageD11.sinograms.point_by_point.PBPRefine class method) (ImageD11.sinograms.tensor_map.TensorMap class method) from_h5py_group() (ImageD11.grain.grain class method) (ImageD11.sinograms.sinogram.GrainSinogram class method) from_hdf_group() (in module ImageD11.sparseframe) from_pbpmap() (ImageD11.sinograms.tensor_map.TensorMap class method) from_stack() (ImageD11.sinograms.tensor_map.TensorMap class method) from_ubis() (ImageD11.sinograms.tensor_map.TensorMap class method) fromSHM() (ImageD11.sinograms.properties.pks_table class method) fromstringlist() (ImageD11.parameters.par method) full_3x3_to_vector() (in module ImageD11.stress) fxyrot() (in module ImageD11.sinograms.roi_iradon)

G

g_to_k() (in module ImageD11.gv_general) gaussian_kde (class in ImageD11.weighted_kde) gen_directions() (in module ImageD11.forward_model.schmidt_factor) gen_planes() (in module ImageD11.forward_model.schmidt_factor) generate_grains() (ImageD11.refinegrains.refinegrains method) generate_group() (in module ImageD11.sym_u) get() (ImageD11.parameters.parameters method) get_2d_peaks_from_4d_peaks() (in module ImageD11.sinograms.sinogram) get_any_phase_pars_obj() (ImageD11.parameters.AnalysisSchema method) get_bigarray() (ImageD11.columnfile.columnfile method) get_cf_2d() (ImageD11.sinograms.dataset.DataSet method) get_cf_2d_from_disk() (ImageD11.sinograms.dataset.DataSet method) get_cf_3d_from_disk() (ImageD11.sinograms.dataset.DataSet method) get_cf_4d() (ImageD11.sinograms.dataset.DataSet method) get_cf_4d_from_disk() (ImageD11.sinograms.dataset.DataSet method) get_clean_labels() (in module ImageD11.sinograms.properties) get_colfile_from_peaks_dict() (ImageD11.sinograms.dataset.DataSet method) get_ds_string() (in module ImageD11.write_graindex_gv) get_dset() (in module ImageD11.frelon_peaksearch) get_gamma_angle() (in module ImageD11.forward_model.schmidt_factor) get_grains_from_disk() (ImageD11.sinograms.dataset.DataSet method) get_help() (in module ImageD11.peaksearcher) get_ipf_colour() (ImageD11.grain.grain method) (ImageD11.unitcell.unitcell method) get_ipf_colour_from_orix_orien() (ImageD11.unitcell.unitcell method) get_ipf_maps() (ImageD11.sinograms.tensor_map.TensorMap method) get_local_gv() (in module ImageD11.sinograms.point_by_point) get_meta_orix_orien() (ImageD11.sinograms.tensor_map.TensorMap method) get_monitor() (ImageD11.sinograms.dataset.DataSet method) get_monitor_pk2d() (ImageD11.sinograms.dataset.DataSet method) get_options() (in module ImageD11.compute_fazit) (in module ImageD11.fft_index_refac) (in module ImageD11.ImageD11_file_series) (in module ImageD11.lattice_reduction) (in module ImageD11.peaksearcher) (in module ImageD11.refinegrains) (in module ImageD11.rsv_mapper) get_origins() (ImageD11.sinograms.point_by_point.PBPRefine method) get_orix_orien() (ImageD11.unitcell.unitcell method) get_parameters() (ImageD11.parameters.parameters method) get_pars_objects() (ImageD11.parameters.AnalysisSchema method) get_phases_from_disk() (ImageD11.sinograms.dataset.DataSet method) get_pixel_mask() (ImageD11.sinograms.point_by_point.PBPMap method) get_rgbs_for_grains() (in module ImageD11.nbGui.nb_utils) get_ring_current_per_scan() (ImageD11.sinograms.dataset.DataSet method) get_scan_h5() (in module ImageD11.forward_model.io) get_series_from_hdf() (in module ImageD11.ImageD11_file_series) get_series_from_options() (in module ImageD11.ImageD11_file_series) get_series_from_stemnum() (in module ImageD11.ImageD11_file_series) get_shape_mask() (ImageD11.sinograms.sinogram.GrainSinogram method) get_start_end() (in module ImageD11.sinograms.properties) get_stress() (ImageD11.sinograms.tensor_map.TensorMap method)

get_unitcells() (ImageD11.unitcell.Phases method) get_variable_list() (ImageD11.parameters.parameters method) (ImageD11.transformer.transformer method) get_variable_stepsizes() (ImageD11.parameters.parameters method) get_variable_values() (ImageD11.parameters.parameters method) get_voxel_idx() (in module ImageD11.sinograms.point_by_point) get_xfab_pars_dict() (ImageD11.parameters.AnalysisSchema method) getanglehkls() (ImageD11.unitcell.unitcell method) getaxis() (ImageD11.transformer.transformer method) getbounds() (in module ImageD11.rsv) getcols() (ImageD11.transformer.transformer method) getcolumn() (ImageD11.columnfile.columnfile method) (ImageD11.transformer.transformer method) getCxyz() (in module ImageD11.rotdex) getdata() (ImageD11.guicommand.guicommand method) getedfheader() (in module ImageD11.ImageD11_file_series) getframe() (ImageD11.sparseframe.SparseScan method) getgrains() (ImageD11.refinegrains.refinegrains method) getgroup() (in module ImageD11.sym_u) getheaderinfo() (ImageD11.peakmerge.peakmerger method) getheaderkeys() (ImageD11.peakmerge.peakmerger method) gethistory() (ImageD11.guicommand.guicommand method) gethkls() (ImageD11.unitcell.unitcell method) gethkls_xfab() (ImageD11.unitcell.unitcell method) getind() (ImageD11.indexing.indexer method) getse() (in module ImageD11.sinograms.pread) getsparse() (in module ImageD11.sinograms.assemble_label) getvars() (ImageD11.transformer.transformer method) glide_plane() (in module ImageD11.symops) glidetest() (in module ImageD11.symops) gof() (ImageD11.refinegrains.refinegrains method) (ImageD11.transformer.transformer method) goforit() (in module ImageD11.sinograms.properties) grain (class in ImageD11.grain) GrainSinogram (class in ImageD11.sinograms.sinogram) grid (class in ImageD11.fft_index_refac) grid_index_parallel() (in module ImageD11.grid_index_parallel) group (class in ImageD11.sym_u) guess_bg() (in module ImageD11.frelon_peaksearch) guess_camera_name() (in module ImageD11.forward_model.io) guess_chunks() (in module ImageD11.sinograms.dataset) guess_detector() (ImageD11.sinograms.dataset.DataSet method) guess_ESRF_paths() (in module ImageD11.nbGui.segmenter_gui_utils) guess_ImageD11_code_path() (in module ImageD11.nbGui.install_ImageD11_from_git) guess_shape() (ImageD11.sinograms.dataset.DataSet method) guessbins() (ImageD11.sinograms.dataset.DataSet method) guesschunk() (ImageD11.sinograms.properties.pks_table method) guicommand (class in ImageD11.guicommand) GuiMaker (class in ImageD11.tkGui.guimaker) guisolver (class in ImageD11.tkGui.guisolver) gv_to_grid_new() (ImageD11.fft_index_refac.grid method) gve_norm() (in module ImageD11.sinograms.point_by_point) GvectorFileType (class in ImageD11.ImageD11options)

H

harvest_masterfile() (in module ImageD11.sinograms.assemble_label) harvestpeaks() (ImageD11.peakmerge.peakmerger method) HdfFileType (class in ImageD11.ImageD11options) helps (ImageD11.saintraw.saintraw attribute)

hexagonal() (in module ImageD11.refinegrains) (in module ImageD11.sym_u) histogram_drlv_fit() (ImageD11.indexing.indexer method) hklmax() (in module ImageD11.sym_u) hkluniq() (in module ImageD11.sinograms.point_by_point)

I

I() (in module ImageD11.unitcell) i_shift (ImageD11.sinograms.point_by_point.PBPMap property) idxpoint() (in module ImageD11.sinograms.point_by_point) im_fabio() (in module ImageD11.forward_model.io) im_scaling() (in module ImageD11.forward_model.io) ImageD11 module ImageD11.blobcorrector module ImageD11.cImageD11 module ImageD11.cImageD11_docstrings module ImageD11.columnfile module ImageD11.compute_fazit module ImageD11.correct module ImageD11.fetch_data module ImageD11.fft_index_refac module ImageD11.finite_strain module ImageD11.forward_model module ImageD11.forward_model.io module ImageD11.forward_model.ori_converter module ImageD11.forward_model.sample_environment module ImageD11.forward_model.schmidt_factor module ImageD11.frelon_peaksearch module ImageD11.grain module ImageD11.grid_index_parallel module ImageD11.guicommand module ImageD11.gv_general module ImageD11.ImageD11_file_series module ImageD11.ImageD11_thread module ImageD11.ImageD11options module ImageD11.indexing module ImageD11.labelimage module ImageD11.lattice_reduction module ImageD11.license module ImageD11.nbGui module ImageD11.nbGui.install_ImageD11_from_git module ImageD11.nbGui.nb_utils module ImageD11.nbGui.segmenter_gui_utils module ImageD11.parameters module ImageD11.peakmerge module ImageD11.peaksearcher module ImageD11.peakselect module ImageD11.rc_array module ImageD11.refinegrains module ImageD11.rotdex module ImageD11.rsv module ImageD11.rsv_mapper module ImageD11.saintraw module ImageD11.scale module

ImageD11.silxGui module ImageD11.simplex module ImageD11.sinograms module ImageD11.sinograms.assemble_label module ImageD11.sinograms.dataset module ImageD11.sinograms.geometry module ImageD11.sinograms.lima_segmenter module ImageD11.sinograms.point_by_point module ImageD11.sinograms.polefigures module ImageD11.sinograms.pread module ImageD11.sinograms.properties module ImageD11.sinograms.roi_iradon module ImageD11.sinograms.sinogram module ImageD11.sinograms.sinogram2crysalis module ImageD11.sinograms.tensor_map module ImageD11.sparseframe module ImageD11.stress module ImageD11.sym_u module ImageD11.symops module ImageD11.tkGui module ImageD11.tkGui.guimaker module ImageD11.tkGui.guisolver module ImageD11.tkGui.listdialog module ImageD11.transform module ImageD11.transformer module ImageD11.unitcell module ImageD11.weighted_kde module ImageD11.write_graindex_gv module ImageD11_stop_now() (ImageD11.ImageD11_thread.ImageD11_thread method) ImageD11_thread (class in ImageD11.ImageD11_thread) ImageFileType (class in ImageD11.ImageD11options) import_all() (ImageD11.sinograms.dataset.DataSet method) import_from_sparse() (ImageD11.sinograms.dataset.DataSet method) import_imagefiles() (ImageD11.sinograms.dataset.DataSet method) import_motors_from_master() (ImageD11.sinograms.dataset.DataSet method) import_nnz() (ImageD11.sinograms.dataset.DataSet method) import_nnz_from_sparse() (ImageD11.sinograms.dataset.DataSet method) import_scans() (ImageD11.sinograms.dataset.DataSet method) index() (in module ImageD11.indexing) indexer (class in ImageD11.indexing) indexer_from_colfile() (in module ImageD11.indexing) indexer_from_colfile_and_ucell() (in module ImageD11.indexing) info() (ImageD11.indexing.clogging method) initgrid() (in module ImageD11.grid_index_parallel) initializer() (in module ImageD11.sinograms.point_by_point) initOptions() (in module ImageD11.sinograms.lima_segmenter) integrate_sino() (in module ImageD11.sinograms.sinogram2crysalis) inv() (ImageD11.rc_array.rc_array method) invariant_props() (ImageD11.stress.EpsSigSolver method) invariants() (in module ImageD11.stress) iplot() (ImageD11.sinograms.point_by_point.PBP method) (ImageD11.sinograms.point_by_point.PBPRefine method) iradon() (in module ImageD11.sinograms.roi_iradon) is_mat_v7p3() (in module ImageD11.forward_model.io) is_sorted() (ImageD11.sparseframe.sparse_frame method) isMember() (ImageD11.sym_u.group method) (ImageD11.sym_u.trans_group method) iter3d() (in module ImageD11.lattice_reduction) iter3d_old() (in module ImageD11.lattice_reduction)

J

j_shift (ImageD11.sinograms.point_by_point.PBPMap property)

jobnames (ImageD11.sinograms.lima_segmenter.SegmenterOptions attribute)

K

k_to_g() (in module ImageD11.gv_general)

keys() (ImageD11.columnfile.columnfile method) (ImageD11.sinograms.tensor_map.TensorMap method)

L

lab_to_recon() (in module ImageD11.sinograms.geometry) lab_to_sample() (in module ImageD11.sinograms.geometry) lab_to_sample_sincos() (in module ImageD11.sinograms.geometry) lab_to_step() (in module ImageD11.sinograms.geometry) labelimage (class in ImageD11.labelimage) labelpeaks() (ImageD11.labelimage.labelimage method) lattice (class in ImageD11.lattice_reduction) lattice_centre() (in module ImageD11.symops) lf() (in module ImageD11.refinegrains) listdialog (class in ImageD11.tkGui.listdialog) lmlabel() (ImageD11.sparseframe.SparseScan method) load() (ImageD11.sinograms.dataset.DataSet method) (ImageD11.sinograms.lima_segmenter.SegmenterOptions method) (ImageD11.sinograms.properties.pks_table class method) (in module ImageD11.sinograms.dataset)

load_json() (ImageD11.parameters.AnalysisSchema method) loadfileparameters() (ImageD11.tkGui.guisolver.guisolver method) (ImageD11.transformer.transformer method) loadfiltered() (ImageD11.refinegrains.refinegrains method) (ImageD11.transformer.transformer method) loadmap() (ImageD11.sinograms.point_by_point.PBPRefine method) (ImageD11.stress.EpsSigSolver method) loadparameters() (ImageD11.parameters.parameters method) (ImageD11.refinegrains.refinegrains method) loadpars() (ImageD11.indexing.indexer method) (ImageD11.stress.EpsSigSolver method) loadpeaks() (ImageD11.sinograms.point_by_point.PBPRefine method) loadubis() (ImageD11.tkGui.guisolver.guisolver method) log() (ImageD11.indexing.clogging method)

M

m_from_string() (in module ImageD11.sym_u) m_to_string() (in module ImageD11.sym_u) main() (in module ImageD11.compute_fazit) (in module ImageD11.rotdex) (in module ImageD11.rsv_mapper) (in module ImageD11.simplex) (in module ImageD11.sinograms.assemble_label) (in module ImageD11.sinograms.lima_segmenter) (in module ImageD11.sinograms.polefigures) (in module ImageD11.sinograms.properties) main2() (in module ImageD11.rotdex) make_ds_list() (in module ImageD11.write_graindex_gv) make_k_vecs() (ImageD11.rsv_mapper.rsv_mapper method) make_pixel_lut() (ImageD11.blobcorrector.correctorclass method) (ImageD11.blobcorrector.perfect method) make_pos_lut() (ImageD11.blobcorrector.correctorclass method) makecmdline() (in module ImageD11.sinograms.sinogram2crysalis) makegroup() (ImageD11.sym_u.group method) makeMenuBar() (ImageD11.tkGui.guimaker.GuiMaker method) makerings() (ImageD11.unitcell.unitcell method) makeuniq() (ImageD11.refinegrains.refinegrains method) map_index_to_recon() (ImageD11.sinograms.tensor_map.TensorMap static method) map_order_to_recon_order() (ImageD11.sinograms.tensor_map.TensorMap static method) map_points_out() (in module ImageD11.forward_model.ori_converter) mask() (ImageD11.sparseframe.sparse_frame method) mask_central_zingers() (ImageD11.sinograms.sinogram.GrainSinogram method) masksub() (ImageD11.frelon_peaksearch.worker method) matrix() (ImageD11.lattice_reduction.lattice method) measurepeaks() (ImageD11.labelimage.labelimage method) mem() (in module ImageD11.rsv) menuBar (ImageD11.tkGui.guimaker.GuiMaker attribute) merge() (in module ImageD11.sinograms.point_by_point) mergelast() (ImageD11.labelimage.labelimage method) mergepeaks() (ImageD11.peakmerge.peakmerger method) minimize() (ImageD11.simplex.Simplex method) mirror_plane() (in module ImageD11.symops) mlem() (in module ImageD11.sinograms.roi_iradon) mmap_h5colf() (in module ImageD11.columnfile) mod() (ImageD11.sym_u.trans_group method) (in module ImageD11.lattice_reduction) mod_360() (in module ImageD11.indexing) module ImageD11 ImageD11.blobcorrector ImageD11.cImageD11 ImageD11.cImageD11_docstrings ImageD11.columnfile ImageD11.compute_fazit ImageD11.correct ImageD11.fetch_data ImageD11.fft_index_refac ImageD11.finite_strain ImageD11.forward_model ImageD11.forward_model.io ImageD11.forward_model.ori_converter ImageD11.forward_model.sample_environment ImageD11.forward_model.schmidt_factor ImageD11.frelon_peaksearch ImageD11.grain ImageD11.grid_index_parallel ImageD11.guicommand ImageD11.gv_general ImageD11.ImageD11_file_series ImageD11.ImageD11_thread ImageD11.ImageD11options ImageD11.indexing ImageD11.labelimage ImageD11.lattice_reduction ImageD11.license ImageD11.nbGui ImageD11.nbGui.install_ImageD11_from_git ImageD11.nbGui.nb_utils ImageD11.nbGui.segmenter_gui_utils ImageD11.parameters ImageD11.peakmerge ImageD11.peaksearcher ImageD11.peakselect ImageD11.rc_array ImageD11.refinegrains ImageD11.rotdex ImageD11.rsv ImageD11.rsv_mapper ImageD11.saintraw ImageD11.scale ImageD11.silxGui ImageD11.simplex ImageD11.sinograms ImageD11.sinograms.assemble_label ImageD11.sinograms.dataset ImageD11.sinograms.geometry ImageD11.sinograms.lima_segmenter ImageD11.sinograms.point_by_point ImageD11.sinograms.polefigures ImageD11.sinograms.pread ImageD11.sinograms.properties ImageD11.sinograms.roi_iradon ImageD11.sinograms.sinogram ImageD11.sinograms.sinogram2crysalis ImageD11.sinograms.tensor_map ImageD11.sparseframe ImageD11.stress ImageD11.sym_u ImageD11.symops ImageD11.tkGui ImageD11.tkGui.guimaker ImageD11.tkGui.guisolver ImageD11.tkGui.listdialog ImageD11.transform ImageD11.transformer ImageD11.unitcell ImageD11.weighted_kde ImageD11.write_graindex_gv

moments() (ImageD11.sparseframe.SparseScan method) monoclinic_a() (in module ImageD11.refinegrains) (in module ImageD11.sym_u) monoclinic_b() (in module ImageD11.refinegrains) (in module ImageD11.sym_u) monoclinic_c() (in module ImageD11.refinegrains) (in module ImageD11.sym_u) motor_mne() (in module ImageD11.ImageD11_file_series) msg() (ImageD11.peaksearcher.timer method) mt (ImageD11.grain.grain property) (ImageD11.sinograms.tensor_map.TensorMap property) multiple_contract_simplex() (ImageD11.simplex.Simplex method) multiply() (in module ImageD11.forward_model.ori_converter) multiply_first_component() (in module ImageD11.forward_model.ori_converter) myfunc() (in module ImageD11.simplex) myhistogram() (in module ImageD11.indexing)

N

n_pk2d() (in module ImageD11.sinograms.properties) name_decorator() (in module ImageD11.sinograms.sinogram2crysalis) nb_choose_best() (in module ImageD11.sinograms.point_by_point) nb_inv() (in module ImageD11.sinograms.point_by_point) nb_inv_3d() (in module ImageD11.sinograms.point_by_point) nb_vector_axis() (ImageD11.rc_array.rc_array method) NDNAMES (ImageD11.sinograms.dataset.DataSet attribute) nearest() (ImageD11.lattice_reduction.lattice method) newcolumnfile (class in ImageD11.columnfile) NewPandasColumnfile (class in ImageD11.columnfile) NI (ImageD11.sinograms.point_by_point.PBPMap property)

NJ (ImageD11.sinograms.point_by_point.PBPMap property) nnz_to_pointer() (in module ImageD11.sparseframe) norm() (in module ImageD11.sinograms.sinogram) norm2() (ImageD11.rc_array.rc_array method) (in module ImageD11.unitcell) normalise() (ImageD11.rsv.rsv method) nUBIs (ImageD11.stress.EpsSigSolver property) numbalabelNd() (in module ImageD11.sinograms.properties) numbapkmerge() (in module ImageD11.sinograms.properties) nvectors() (ImageD11.rc_array.rc_array method) NY (ImageD11.sinograms.point_by_point.PBPMap property)

O

ok() (ImageD11.tkGui.listdialog.listdialog method) op() (ImageD11.sym_u.group method) (ImageD11.sym_u.trans_group method) orient() (ImageD11.unitcell.unitcell method) orient_BL() (in module ImageD11.unitcell) orix_orien (ImageD11.grain.grain property) orix_phase (ImageD11.grain.grain property) (ImageD11.unitcell.unitcell property) orthorhombic() (in module ImageD11.refinegrains) (in module ImageD11.sym_u)

other_direction() (ImageD11.rc_array.rc_array method) otherheaderstuff() (ImageD11.peakmerge.pkimage method) out_of_eta_range() (ImageD11.indexing.indexer method) output2dpeaks() (ImageD11.labelimage.labelimage method) outputpeaks() (ImageD11.labelimage.labelimage method) overlaps() (in module ImageD11.sparseframe) overlaps_linear (class in ImageD11.sparseframe) overlaps_matrix (class in ImageD11.sparseframe)

P

P() (in module ImageD11.unitcell) padd() (in module ImageD11.sinograms.sinogram2crysalis) pairrow() (in module ImageD11.sinograms.properties) pairscans() (in module ImageD11.sinograms.properties) palloc() (in module ImageD11.sinograms.sinogram) PandasColumnfile (class in ImageD11.columnfile) par (class in ImageD11.parameters) ParameterFileType (class in ImageD11.ImageD11options) parameters (class in ImageD11.parameters) pars (ImageD11.refinegrains.refinegrains attribute) parse_xml_file() (ImageD11.forward_model.sample_environment.admet method) parsedocs() (ImageD11.saintraw.saintraw method) PBP (class in ImageD11.sinograms.point_by_point) PBPMap (class in ImageD11.sinograms.point_by_point) PBPRefine (class in ImageD11.sinograms.point_by_point) pderr() (in module ImageD11.columnfile) peak (class in ImageD11.peakmerge) peakmerger (class in ImageD11.peakmerge) peaks_table (ImageD11.sinograms.dataset.DataSet property) peaksearch() (ImageD11.fft_index_refac.grid method) (ImageD11.frelon_peaksearch.worker method) (ImageD11.labelimage.labelimage method) (in module ImageD11.peaksearcher) peaksearch_driver() (in module ImageD11.peaksearcher) perfect (class in ImageD11.blobcorrector) Phases (class in ImageD11.unitcell) pixel_lut() (ImageD11.blobcorrector.eiger_spatial method) PixelLUT (class in ImageD11.transform) pk2d (ImageD11.sinograms.dataset.DataSet property) pk2d() (ImageD11.sinograms.properties.pks_table method) pk2dmerge() (ImageD11.sinograms.properties.pks_table method) pk4d (ImageD11.sinograms.dataset.DataSet property) pkimage (class in ImageD11.peakmerge) pks_table (class in ImageD11.sinograms.properties) pks_table_from_scan() (in module ImageD11.sinograms.properties) plane_trace_components() (in module ImageD11.forward_model.schmidt_factor) plnames (ImageD11.rsv.rsv attribute)

plot() (ImageD11.sinograms.tensor_map.TensorMap method) plot_all_ipfs() (in module ImageD11.nbGui.nb_utils) plot_all_ipfs_from_meta_orien() (in module ImageD11.nbGui.nb_utils) plot_best() (ImageD11.sinograms.point_by_point.PBPMap method) plot_data() (ImageD11.forward_model.sample_environment.admet method) plot_direct_pole_figure() (in module ImageD11.nbGui.nb_utils) plot_grain_positions() (in module ImageD11.nbGui.nb_utils) plot_grain_sinograms() (in module ImageD11.nbGui.nb_utils) plot_index_results() (in module ImageD11.nbGui.nb_utils) plot_inverse_pole_figure() (in module ImageD11.nbGui.nb_utils) plot_inverse_pole_figure_from_meta_orien() (in module ImageD11.nbGui.nb_utils) plot_nuniq_hist() (ImageD11.sinograms.point_by_point.PBPMap method) plot_sorted_peak_intensity() (in module ImageD11.peakselect) plots() (ImageD11.frelon_peaksearch.worker method) pmax() (in module ImageD11.sinograms.sinogram) pnames (ImageD11.transform.Ctransform attribute) (ImageD11.transform.PixelLUT attribute) point_by_point() (ImageD11.sinograms.point_by_point.PBP method) pps() (in module ImageD11.frelon_peaksearch) pread() (in module ImageD11.sinograms.pread) prepare_astra_bash() (in module ImageD11.nbGui.nb_utils) prepare_mlem_bash() (in module ImageD11.nbGui.nb_utils) prepare_pbp_bash() (in module ImageD11.nbGui.nb_utils) prepare_peaks_from_2d() (ImageD11.sinograms.sinogram.GrainSinogram method) prepare_peaks_from_4d() (ImageD11.sinograms.sinogram.GrainSinogram method) prepare_refine_bash() (in module ImageD11.sinograms.point_by_point) printdatasets() (in module ImageD11.nbGui.segmenter_gui_utils) printresult() (ImageD11.refinegrains.refinegrains method) printsamples() (in module ImageD11.nbGui.segmenter_gui_utils) process() (ImageD11.sinograms.polefigures.splatter method) (in module ImageD11.frelon_peaksearch) (in module ImageD11.sinograms.properties) project_direction() (in module ImageD11.forward_model.schmidt_factor) props() (ImageD11.fft_index_refac.grid method) (in module ImageD11.sinograms.properties) proxy() (in module ImageD11.sinograms.point_by_point) put_incr() (in module ImageD11.cImageD11) pv() (ImageD11.fft_index_refac.grid method)

Q

quat2axangle() (in module ImageD11.forward_model.ori_converter) quat2euler() (in module ImageD11.forward_model.ori_converter)

quat2rod() (in module ImageD11.forward_model.ori_converter) quat2u() (in module ImageD11.forward_model.ori_converter) quats_to_euler() (in module ImageD11.forward_model.schmidt_factor)

R

R() (in module ImageD11.unitcell) radians() (in module ImageD11.unitcell) radon() (in module ImageD11.sinograms.roi_iradon) radToDeg() (in module ImageD11.forward_model.schmidt_factor) random_quaternions() (in module ImageD11.forward_model.ori_converter) random_quats() (in module ImageD11.forward_model.schmidt_factor) rc_array (class in ImageD11.rc_array) read() (ImageD11.saintraw.saintraw method) read2pipe() (in module ImageD11.sinograms.pread) read_data() (ImageD11.forward_model.sample_environment.admet method) read_grain_file() (in module ImageD11.grain) read_grain_file_h5() (in module ImageD11.grain) read_h5() (in module ImageD11.sinograms.sinogram) read_h5_file() (in module ImageD11.forward_model.io) read_h5_struct() (in module ImageD11.forward_model.io) read_images_from_h5() (in module ImageD11.forward_model.io) read_matlab_file() (in module ImageD11.forward_model.io) read_motor_posisitions_from_h5() (in module ImageD11.forward_model.io) read_par_file() (in module ImageD11.parameters) read_peaks() (ImageD11.fft_index_refac.grid method) read_segment() (in module ImageD11.sinograms.pread) read_slice_recon() (in module ImageD11.sinograms.sinogram) read_tomo_from_hdf5() (in module ImageD11.forward_model.io) read_xml_data() (ImageD11.forward_model.sample_environment.admet method) reader() (in module ImageD11.sinograms.lima_segmenter) readfile() (ImageD11.columnfile.columnfile method) readfit2dfloats() (in module ImageD11.blobcorrector) readfit2dspline() (ImageD11.blobcorrector.correctorclass method) readgvfile() (ImageD11.indexing.indexer method) readN() (in module ImageD11.sinograms.pread) readpartial() (in module ImageD11.sinograms.pread) readpeaks() (ImageD11.peakmerge.peakmerger method) readubis() (ImageD11.refinegrains.refinegrains method) (in module ImageD11.indexing) readvol() (in module ImageD11.rsv) realloc() (ImageD11.sparseframe.overlaps_linear method) (ImageD11.sparseframe.overlaps_matrix method) recon() (ImageD11.sinograms.sinogram.GrainSinogram method) recon_cens() (in module ImageD11.sinograms.roi_iradon) recon_index_to_map() (ImageD11.sinograms.tensor_map.TensorMap static method) recon_omega_to_dty() (in module ImageD11.sinograms.geometry) recon_omega_to_dtyi() (in module ImageD11.sinograms.geometry) recon_order_to_map_order() (ImageD11.sinograms.tensor_map.TensorMap static method) recon_to_lab() (in module ImageD11.sinograms.geometry) recon_to_sample() (in module ImageD11.sinograms.geometry) recon_to_step() (in module ImageD11.sinograms.geometry)

reduce() (ImageD11.fft_index_refac.grid method) (ImageD11.sym_u.trans_group method) (in module ImageD11.lattice_reduction) ref_unitcell (ImageD11.grain.grain property) refine() (ImageD11.indexing.indexer method) (ImageD11.refinegrains.refinegrains method) (in module ImageD11.indexing) refine_grain_positions() (in module ImageD11.nbGui.nb_utils) refine_map() (in module ImageD11.sinograms.point_by_point) refine_vector() (in module ImageD11.fft_index_refac) refinegrains (class in ImageD11.refinegrains) refinepositions() (ImageD11.refinegrains.refinegrains method) refineubis() (ImageD11.refinegrains.refinegrains method) reflect_simplex() (ImageD11.simplex.Simplex method) rel_to_absolute() (ImageD11.parameters.AnalysisSchema method) remainders() (ImageD11.lattice_reduction.lattice method) remove_shm_from_resource_tracker() (in module ImageD11.sinograms.properties) removerows() (ImageD11.columnfile.columnfile method) reorder() (ImageD11.columnfile.columnfile method) (ImageD11.sparseframe.sparse_frame method) report() (ImageD11.sinograms.dataset.DataSet method) required_pars (ImageD11.compute_fazit.xydisp attribute) reset() (ImageD11.indexing.indexer method) (ImageD11.transform.Ctransform method) reset_labels() (ImageD11.refinegrains.refinegrains method) rhombohedralP() (in module ImageD11.sym_u) rings_mask() (in module ImageD11.peakselect) rmt (ImageD11.grain.grain property) Rod (ImageD11.grain.grain property) rod2quat() (in module ImageD11.forward_model.ori_converter) rot_matrix() (in module ImageD11.forward_model.schmidt_factor) rotate_3x3_tensor() (in module ImageD11.stress) rotate_into_fundamental_zone() (in module ImageD11.forward_model.ori_converter) rotate_vectors() (ImageD11.gv_general.rotation_axis method) rotate_vectors_inverse() (ImageD11.gv_general.rotation_axis method) rotation_axis (class in ImageD11.gv_general) rotation_axis() (in module ImageD11.symops) roundfloat() (in module ImageD11.peakmerge) rsv (class in ImageD11.rsv) rsv_mapper (class in ImageD11.rsv_mapper) rsweep() (in module ImageD11.lattice_reduction) run() (ImageD11.ImageD11_thread.ImageD11_thread method) run_astra() (in module ImageD11.sinograms.sinogram) run_ImageD11_from_git() (in module ImageD11.nbGui.install_ImageD11_from_git) run_iradon() (in module ImageD11.sinograms.roi_iradon) run_mlem() (in module ImageD11.sinograms.roi_iradon) run_refine() (ImageD11.sinograms.point_by_point.PBPRefine method)

S

saintraw (class in ImageD11.saintraw) sample_to_lab() (in module ImageD11.sinograms.geometry) sample_to_lab_sincos() (in module ImageD11.sinograms.geometry) sample_to_recon() (in module ImageD11.sinograms.geometry) sample_to_step() (in module ImageD11.sinograms.geometry) save() (ImageD11.sinograms.dataset.DataSet method) (ImageD11.sinograms.lima_segmenter.SegmenterOptions method) (ImageD11.sinograms.properties.pks_table method) save_array() (in module ImageD11.grain) (in module ImageD11.nbGui.nb_utils) (in module ImageD11.sinograms.sinogram) save_data() (ImageD11.forward_model.sample_environment.admet method) save_grains_to_disk() (ImageD11.sinograms.dataset.DataSet method) save_tth_his() (ImageD11.transformer.transformer method) save_ubi_map() (in module ImageD11.nbGui.nb_utils) savegrains() (ImageD11.refinegrains.refinegrains method) savegv() (ImageD11.transformer.transformer method) saveindexing() (ImageD11.indexing.indexer method) savemap() (ImageD11.sinograms.point_by_point.PBPRefine method) saveparameters() (ImageD11.parameters.parameters method) (ImageD11.refinegrains.refinegrains method) (ImageD11.tkGui.guisolver.guisolver method) (ImageD11.transformer.transformer method) savepars() (ImageD11.indexing.indexer method) (ImageD11.stress.EpsSigSolver method) savepeaks() (ImageD11.peakmerge.peakmerger method) (ImageD11.sinograms.point_by_point.PBPRefine method) saveubis() (ImageD11.indexing.indexer method) sbatchlocal() (in module ImageD11.sinograms.lima_segmenter) scale (class in ImageD11.scale) scale() (ImageD11.scale.scale method) scaleimage() (ImageD11.scale.scale method) scaleseries() (in module ImageD11.scale) score() (ImageD11.indexing.indexer method) (ImageD11.lattice_reduction.lattice method) score_all_pairs() (ImageD11.indexing.indexer method) scorethem() (ImageD11.indexing.indexer method) scotts_factor() (ImageD11.weighted_kde.gaussian_kde method) screw_axis() (in module ImageD11.symops) search_2folds() (in module ImageD11.lattice_reduction) segment() (in module ImageD11.sinograms.lima_segmenter) segment_lima() (in module ImageD11.sinograms.lima_segmenter) SegmenterOptions (class in ImageD11.sinograms.lima_segmenter) select() (in module ImageD11.sinograms.lima_segmenter) select_ring_peaks_by_intensity() (in module ImageD11.peakselect) series_from_fabioseries() (in module ImageD11.ImageD11_file_series) set() (ImageD11.parameters.parameters method) set_attributes() (ImageD11.columnfile.columnfile method) set_bandwidth() (ImageD11.weighted_kde.gaussian_kde method) set_bigarray() (ImageD11.columnfile.columnfile method) set_parameters() (ImageD11.parameters.parameters method) set_pixels() (ImageD11.sparseframe.sparse_frame method) set_translation() (ImageD11.refinegrains.refinegrains method) set_ubi() (ImageD11.grain.grain method) set_variable_values() (ImageD11.parameters.parameters method) set_varylist() (ImageD11.parameters.parameters method) setcolumn() (ImageD11.columnfile.columnfile method) setfiltered() (ImageD11.transformer.transformer method) setmap() (ImageD11.sinograms.point_by_point.PBPRefine method) setmask() (ImageD11.sinograms.point_by_point.PBPRefine method) setparameters() (ImageD11.columnfile.columnfile method) setpeaks() (ImageD11.sinograms.point_by_point.PBP method) (ImageD11.sinograms.point_by_point.PBPRefine method)

setpixeltolerance() (ImageD11.peakmerge.peakmerger method) setsingle() (ImageD11.sinograms.point_by_point.PBPRefine method) setup() (ImageD11.sinograms.lima_segmenter.SegmenterOptions method) (in module ImageD11.sinograms.lima_segmenter) setup_ImageD11_from_git() (in module ImageD11.nbGui.install_ImageD11_from_git) setup_slurm_array() (in module ImageD11.sinograms.lima_segmenter) setvars() (ImageD11.transformer.transformer method) setxyomcols() (ImageD11.transformer.transformer method) sf2gv() (ImageD11.transform.Ctransform method) sf2xyz() (ImageD11.transform.Ctransform method) shape (ImageD11.sinograms.tensor_map.TensorMap property) share() (ImageD11.sinograms.properties.pks_table method) shared_numpy_array (class in ImageD11.sinograms.properties) si_cube_s3dxrd_dataset() (in module ImageD11.fetch_data) sig_crystal (ImageD11.sinograms.tensor_map.TensorMap property) sig_devia (ImageD11.sinograms.tensor_map.TensorMap property) sig_hydro (ImageD11.sinograms.tensor_map.TensorMap property) sig_mises (ImageD11.sinograms.tensor_map.TensorMap property) sig_sample (ImageD11.sinograms.tensor_map.TensorMap property) silverman_factor() (ImageD11.weighted_kde.gaussian_kde method) Simplex (class in ImageD11.simplex) sino_shift_and_pad() (in module ImageD11.sinograms.geometry) sinohist() (ImageD11.sinograms.dataset.DataSet method) SinoScan (class in ImageD11.sinograms.sinogram2crysalis) sinth2_sqrt_deriv() (in module ImageD11.transform) slice() (ImageD11.rsv.rsv method) slow_score() (ImageD11.fft_index_refac.grid method) slurm_submit_and_wait() (in module ImageD11.nbGui.nb_utils) slurm_submit_many_and_wait() (in module ImageD11.nbGui.nb_utils) sort() (ImageD11.saintraw.saintraw method) (ImageD11.sparseframe.sparse_frame method) sort_by() (ImageD11.sparseframe.sparse_frame method) sortby() (ImageD11.columnfile.columnfile method) sorted_peak_intensity_mask() (in module ImageD11.peakselect) sorted_peak_intensity_mask_and_cumsum() (in module ImageD11.peakselect) sortvec_len() (in module ImageD11.lattice_reduction) sortvec_xyz() (in module ImageD11.lattice_reduction) sparse_connected_pixels() (in module ImageD11.sparseframe) sparse_frame (class in ImageD11.sparseframe) sparse_localmax() (in module ImageD11.sparseframe) sparse_moments() (in module ImageD11.sparseframe) sparse_smooth() (in module ImageD11.sparseframe) SparseScan (class in ImageD11.sparseframe) spatial() (ImageD11.transform.PixelLUT method) splatter (class in ImageD11.sinograms.polefigures) splinefile (ImageD11.blobcorrector.perfect attribute) SplineFileType (class in ImageD11.ImageD11options) step_grid_from_ybincens() (in module ImageD11.sinograms.geometry) step_omega_to_dty() (in module ImageD11.sinograms.geometry) step_omega_to_dtyi() (in module ImageD11.sinograms.geometry) step_to_lab() (in module ImageD11.sinograms.geometry) step_to_recon() (in module ImageD11.sinograms.geometry) step_to_sample() (in module ImageD11.sinograms.geometry) stepsizes (ImageD11.refinegrains.refinegrains attribute) strain2stress_Lab() (ImageD11.stress.EpsSigSolver method) strain2stress_Ref() (ImageD11.stress.EpsSigSolver method) STRINGLISTS (ImageD11.sinograms.dataset.DataSet attribute) sum_sinogram() (in module ImageD11.sinograms.sinogram2crysalis) SVD (ImageD11.finite_strain.DeformationGradientTensor property) sx_sy_y0_from_dty_omega() (in module ImageD11.sinograms.geometry) symm_to_e6() (in module ImageD11.finite_strain) (in module ImageD11.grain)

T

take() (ImageD11.saintraw.saintraw method) TensorMap (class in ImageD11.sinograms.tensor_map) test() (ImageD11.blobcorrector.correctorclass method) (in module ImageD11.fft_index_refac) (in module ImageD11.sym_u) test_absence() (in module ImageD11.symops) test_benoit() (in module ImageD11.refinegrains) test_many_points() (in module ImageD11.grid_index_parallel) test_nac() (in module ImageD11.refinegrains) testit() (in module ImageD11.sinograms.properties) testready() (in module ImageD11.sinograms.assemble_label) tetragonal() (in module ImageD11.refinegrains) (in module ImageD11.sym_u) threshold() (ImageD11.sparseframe.sparse_frame method) tick() (ImageD11.peaksearcher.timer method) tictoc (class in ImageD11.sinograms.properties) timer (class in ImageD11.peaksearcher) titles (ImageD11.labelimage.labelimage attribute) (ImageD11.saintraw.saintraw attribute) to_ctf_mtex() (ImageD11.sinograms.tensor_map.TensorMap method) to_dense() (ImageD11.sparseframe.sparse_frame method)

to_h5() (ImageD11.sinograms.point_by_point.PBPRefine method) (ImageD11.sinograms.tensor_map.TensorMap method) to_h5py_group() (ImageD11.grain.grain method) (ImageD11.sinograms.sinogram.GrainSinogram method) to_hdf_group() (ImageD11.sparseframe.sparse_frame method) to_matrix() (ImageD11.gv_general.rotation_axis method) to_paraview() (ImageD11.sinograms.tensor_map.TensorMap method) to_pbpmap() (ImageD11.sinograms.tensor_map.TensorMap method) tock() (ImageD11.peaksearcher.timer method) tocolumnfile() (ImageD11.saintraw.saintraw method) top_pixels() (in module ImageD11.sinograms.lima_segmenter) tostring() (ImageD11.unitcell.unitcell method) tostringlist() (ImageD11.parameters.par method) trans_group (class in ImageD11.sym_u) transformer (class in ImageD11.transformer) triclinic() (in module ImageD11.refinegrains) (in module ImageD11.sym_u) trigonal() (in module ImageD11.sym_u) trigonalH() (in module ImageD11.refinegrains) trigonalP() (in module ImageD11.refinegrains) (in module ImageD11.sym_u) tth_entropy() (ImageD11.transformer.transformer method)

U

U (ImageD11.finite_strain.DeformationGradientTensor property) (ImageD11.grain.grain property) u (ImageD11.grain.grain property) U (ImageD11.sinograms.tensor_map.TensorMap property) u2euler() (in module ImageD11.forward_model.ori_converter) u2quat() (in module ImageD11.forward_model.ori_converter) UB (ImageD11.grain.grain property) ub (ImageD11.grain.grain property) UB (ImageD11.sinograms.tensor_map.TensorMap property) UBI (ImageD11.sinograms.point_by_point.PBPMap property) ubi (ImageD11.sinograms.point_by_point.PBPMap property) UBI (ImageD11.sinograms.tensor_map.TensorMap property) ubi_and_ucell_to_u() (in module ImageD11.sinograms.point_by_point) ubi_equiv() (in module ImageD11.unitcell) ubi_fit_2pks() (in module ImageD11.indexing) ubi_to_unitcell() (in module ImageD11.sinograms.point_by_point) UbiFileType (class in ImageD11.ImageD11options) ubitoB() (in module ImageD11.indexing) ubitocellpars() (in module ImageD11.indexing) ubitoRod() (in module ImageD11.indexing) ubitoU() (in module ImageD11.indexing) uncompute_g_vectors() (in module ImageD11.transform)

uncompute_one_g_vector() (in module ImageD11.transform) uniq_grain_list (class in ImageD11.grid_index_parallel) unique_with_counts() (in module ImageD11.sinograms.point_by_point) unit() (in module ImageD11.unitcell) unitcell (class in ImageD11.unitcell) (ImageD11.grain.grain property) (ImageD11.sinograms.tensor_map.TensorMap property) unitcell_from_parameters() (in module ImageD11.unitcell) update_colfile_pars() (ImageD11.sinograms.dataset.DataSet method) update_geometryfile() (ImageD11.parameters.AnalysisSchema method) update_lab_position_from_peaks() (ImageD11.sinograms.sinogram.GrainSinogram method) update_lab_position_from_recon() (ImageD11.sinograms.sinogram.GrainSinogram method) update_other() (ImageD11.parameters.parameters method) update_parfiles() (ImageD11.parameters.AnalysisSchema method) update_paths() (ImageD11.sinograms.dataset.DataSet method) update_phasefile() (ImageD11.parameters.AnalysisSchema method) update_recon_parameters() (ImageD11.sinograms.sinogram.GrainSinogram method) update_yourself() (ImageD11.parameters.parameters method) updateGeometry() (ImageD11.columnfile.columnfile method) updateGV() (ImageD11.columnfile.columnfile method) updateparameters() (ImageD11.indexing.indexer method) (ImageD11.stress.EpsSigSolver method) (ImageD11.transformer.transformer method)

V

validate() (ImageD11.tkGui.listdialog.listdialog method) vector_axis() (ImageD11.rc_array.rc_array method)

vector_to_full_3x3() (in module ImageD11.stress) VRS (ImageD11.finite_strain.DeformationGradientTensor property)

W

warning() (ImageD11.indexing.clogging method) wedgechi() (in module ImageD11.gv_general) wedgemat() (in module ImageD11.gv_general) weighted_lstsq_ubi_fit() (in module ImageD11.sinograms.point_by_point) withvec() (ImageD11.lattice_reduction.lattice method) worker (class in ImageD11.frelon_peaksearch) wrap_test_many_points() (in module ImageD11.grid_index_parallel) wrap_test_many_points_init() (in module ImageD11.grid_index_parallel) write() (ImageD11.compute_fazit.xydisp method) (ImageD11.saintraw.saintraw method) write_colfile() (ImageD11.transformer.transformer method) write_edf() (in module ImageD11.forward_model.io) write_grain_file() (in module ImageD11.grain)

write_grain_file_h5() (in module ImageD11.grain) write_graindex_gv() (ImageD11.transformer.transformer method) (in module ImageD11.write_graindex_gv) write_h5() (in module ImageD11.sinograms.sinogram) write_pbp_strain() (in module ImageD11.sinograms.sinogram) write_pct_vol() (in module ImageD11.forward_model.io) write_pyFAI() (ImageD11.transformer.transformer method) write_slice_recon() (in module ImageD11.sinograms.sinogram) write_ubi_file() (in module ImageD11.indexing) write_xdmf() (in module ImageD11.forward_model.io) writefile() (ImageD11.columnfile.columnfile method) writenormedvol() (in module ImageD11.rsv) writevol() (ImageD11.rsv_mapper.rsv_mapper method) (in module ImageD11.rsv)

X

xsize (ImageD11.blobcorrector.perfect attribute) xydisp (class in ImageD11.compute_fazit)

xyz2geometry() (ImageD11.transform.Ctransform method) xyz2gv() (ImageD11.transform.Ctransform method)

Y

ysize (ImageD11.blobcorrector.perfect attribute)